CDSAGENDA V.5 "2nd Conference on Systems Biology and New Sequencing Techniques" (2-4 November), preceded by Introductory Lectures on "Quantitative Approaches to Biological Problems" (31 October

"2nd Conference on Systems Biology and New Sequencing Techniques" (2-4 November), preceded by Introductory Lectures on "Quantitative Approaches to Biological Problems" (31 October - 1 November)

Start Time:

31 October 2011 at 08:30

Ends On:

4 November 2011

Location:

Trieste - Italy

Venue:

AGH (Kastler Lecture Hall)

Organizer(s):

Organizing Committee: P. Kahlem [EBI - Cambridge], B. Mishra [NYU/Courant Institute] R. Rabadan [Columbia University], G. Stolovitzky [IBM Research, USA]; Local Organizer: M. Marsili [ICTP].

Description:

Material:

Monday, 31 October 2011

Room: Adriatico Guest House Kastler Lecture Hall

08:30
09:30

REGISTRATION

01h00'

Room: Desk, outside Kastler lecture room, Adriatico guest house lower level 1

09:30
11:00

For administrative formalities

01h30'

11:00
11:30

Opening

30'

11:30
13:00

Introduction to Virus Evolution and Cancer Genomics

01h30'

R. Rabadan
Columbia University - NY, United States of America

13:00
14:30

LUNCH BREAK

01h30'

14:30
16:00

From DNA Sequencing to Genomes: the Assembly Challenge

01h30'

lecture_notes

G. Narzisi
Cold Spring Harbor Laboratory (CSHL), United States of America

16:30
18:00

Laboratory Tutorials

01h30'

Hossein KHIABANIAN & Rachel MELAMED
Columbia University, NY - United States of America

Room: Adriatico Guest House - Eklund Informatics Lab (Lower Level 1)

18:30
18:30

WELCOME PARTY

Room: Adriatico Guest House Cafeteria

Tuesday, 1 November 2011

Room: Adriatico Guest House Kastler Lecture Hall

09:30
11:00

DNA Sequencing Technologies: Past, Present, and Future

01h30'

lecture_notes

A. Hassibi
University of Texas at Austin, United States of America

11:00
11:30

Coffee Break

30'

Room: Adriatico Guest House Cafeteria

11:30
13:00

Introduction to Systems Biology - Examples from the ENFIN Consortium

01h30'

lecture_notes

P. Kahlem
European Bioinformatics Institute - Cambridge, United Kingdom

13:00
14:30

LUNCH BREAK

01h30'

14:30
16:00

Laboratory Tutorials

01h30'

Hossein KHIABANIAN & Rachel MELAMED
Columbia University - NY, United States of America

Room: Adriatico Guest House - Eklund Informatics Lab (Lower Level 1)

Wednesday, 2 November 2011

Room: Adriatico Guest House Kastler Lecture Hall

10:00
10:15

Conference Opening

15'

10:15
11:00

Using Systems Biology to unravel Host-pathogen Interactions

45'

S. Shapira
Columbia University, New York - USA

11:00
11:30

Coffee Break

30'

Room: Adriatico Guest House Cafeteria

11:30
12:15

Statistical physics approach to the prediction of native contacts in proteins from sequence variability

45'

R. Zecchina
Politecnico di Torino, Italy

12:15
13:00

(How) can New Sequencing Technologies help Algorithmic/Executable Systems Biology?

45'

E. R. Mendoza
Univ. of the Philippines Diliman; and Univ. Ludwig Maximilians, Munich

13:00
14:30

LUNCH BREAK

01h30'

14:30
15:15

Sequencing, Sequencing, and Sequencing

45'

Ning Li
BGI, Denmark

15:15
16:00

Life on the edge: Proteins are close to their solubility limits

45'

M. Vendruscolo
University of Cambridge, United Kingdom

18:30
18:30

RECEPTION

Room: Adriatico Guest House Cafeteria

Thursday, 3 November 2011

Room: Adriatico Guest House Kastler Lecture Hall

09:30
10:15

Reverse engineering whole-genome networks using high performance parallel computers

45'

S. Aluru
S. Aluru, Iowa State University, USA; and Indian Institute of Technology Bombay, India

10:15
11:00

Tracking the Evolution of Influenza Viruses

45'

H. Khiabanian
Columbia University, NY - United States of America

11:00
11:30

Coffee Break

30'

Room: Adriatico Guest House Cafeteria

11:30
12:15

Cancer Genome Analysis Pipeline

45'

M. Vazquez
CNIO, Madrid

12:15
13:00

The Master Regulators of Stem Cells and Cancer in the Brain

45'

A. Iavarone
Columbia University - NY, United States of America

13:00
14:30

LUNCH BREAK

01h30'

14:30
15:15

Genome-based drug re-purposing: a new golden age for DNA Microarrays?

45'

F. Iorio
EMBL-EBI Cambridge, United Kingdom

15:15
16:00

Nonlinear Representation of the Genome: Elastic Genome Browsers

45'

V. Chandru
Strand Life Sciences Private Limited - Bangalore, India

Friday, 4 November 2011

Room: Adriatico Guest House Kastler Lecture Hall

09:30
10:15

Refining simple fundamental ideas to produce medically useful techniques

45'

C. R. Cantor
SEQUENOM - CA, United States of America

10:15
11:00

Using next generation sequencing to unravel the forces shaping the genetic landscape in populations of S. cerevosoae

45'

D. Cavalieri
University of Florence, Italy

11:00
11:30

Coffee Break

30'

Room: Adriatico Guest House Cafeteria

11:30
12:15

Advanced Nucleic Acid Sequence Analysis Methods

45'

I. Gut
Centre Nacional d'Analisis Genomica - CNAG, Barcelona; Spain

12:15
13:00

Cis-regulatory Architecture of the Human Genome

45'

John A. Stamatoyannopoulos
University of Washington, Seattle - United States of America

13:00
14:30

LUNCH BREAK

01h30'