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Category: List of Bases 2005 2005 ICTP activities in Trieste ICTP activities in Trieste
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lecture

Start Time:

30 May 2005 at 08:30

Ends On:

3 June 2005

Location:

Trieste - Italy

Venue:

MB (MLH)

Organizer(s):

S.M. Bhattacharjee, C. Micheletti, A. Stasiak

Description:

The Abdus Salam International Centre for Theoretical Physics (ICTP), Trieste, Italy, is organizing an International Workshop on Biopolymers to be held in Trieste from 30 May to 3 June 2005.

The activity is directed by Somendra M. Bhattacharjee (Institute of Physics, Bhubaneswar, India), Cristian Micheletti (SISSA, Trieste, Italy) and Andrzej Stasiak (University of Lausanne, Switzerland).

The purpose of the Workshop is to provide state-of-the-art perspectives on experimental, theoretical and computational approaches to this vital area and to foster discussions on the challenges and new strategies for understanding biopolymers.

Among others, the following problems will be discussed:

- Single-molecule experiments on DNA and proteins
- Determination and prediction of protein structure and function
- DNA-protein interactions
- DNA structure and topology
- Chromosome structure

LIST OF SPEAKERS (updated on 31 May 2005)

D. Bensimon, France
K. Bystricky, France
H.S. Chan, Canada
P. De Los Rios, Switzerland
A. Fersht, UK
L. Finzi, Italy
T.-X. Hoang, Vietnam
O. Hyrien, France
R. Jernigan, USA
T. Kiefhaber, Switzerland
S.C. Kowalczykowski, USA
A. Laio, Switzerland
F. Livolant, France
J.H. Maddocks, Switzerland
D. Marenduzzo, UK
A. Maritan, Italy
W.K. Olson, USA
L. Postow, USA
M. Prentiss, USA
H.A. Scheraga, USA
K.L. Sebastian, India
J.-L. Sikorav, France
J. Stavans, Israel
R. Twarock, UK
E.L. Zechiedrich, USA
X. Zhu, USA



PARTICIPATION

Scientists from all countries that are members of the UN, UNESCO or IAEA can attend the Workshop. The main purpose of the Centre is to help researchers from developing countries within the framework of international cooperation. However, scientists from developed countries are most welcome to attend. As the Workshop will be conducted in English, participants must have an adequate working knowledge of that language.

As a rule, travel and subsistence expenses of the participants are borne by their home institutions. However, limited funds are available for a small number of applicants who are nationals of, and working in, developing countries. The Organizers will select participants, and allocate the financial aid, upon evaluation of the application forms. As scarcity of funds allows travel to be granted only in a few exceptional cases, every effort should be made by candidates to secure support for their fare from their home country. Such financial support is available only to those attending the entire Workshop. There is no registration fee to attend this activity.

CLOSING DATE: 21 JANUARY 2005 FOR RECEIPT OF APPLICATIONS.

Candidates should complete, sign and return the Application Form, downloadable from this WEB Page (see below).

The list of recent publications is necessary to evaluate the pertinence to the subject of the Workshop.

The Application form should be sent to:

Workshop on Biopolymers (SMR.1658)
c/o Ms. N. Ivanissevich
the Abdus Salam ICTP
Strada Costiera, 11
I-34014 Trieste, Italy

E-mail: smr1658@ictp.trieste.it
Telefax: +39-040-224163
Telephone: +39-040-2240383

ALL PARTICIPANTS WISHING TO MAKE A POSTER PRESENTATION ARE KINDLY REQUESTED TO READ THE NOTE BELOW TO BE FOUND UNDER "MORE INFORMATION"

Material:

no notes available

30 May 2005
08:30
11:00
Registration and administrative formalities
02h30'
11:00
11:15
Opening remarks
15'
K.R. Sreenivasan, ICTP Director
30 May 2005
11:20
12:10
How small proteins fold
50'
Fersht, A.
Cambridge University, UK
12:10
13:00
The two aspects of the protein folding problem
50'
Scheraga, H.A.
Cornell University, Ithaca, USA
13:00
14:30
Break
01h30'
30 May 2005
14:30
15:20
Properties of the free energy barriers for protein folding
50'
Kiefhaber, T.
University Basel, Switzerland
15:20
16:10
A unified physics perspective on proteins
50'
Maritan, A.
Università degli Studi di Padova, Italy
16:10
16:30
Coffee break
20'
16:30
17:20
Cooperativity principles in protein folding: desolvation is a likely origin of robust enthalpic barriers
50'
Chan, H.S.
University of Toronto, Canada
17:20
18:10
The cohesive fluctuation dynamics of proteins
50'
Jernigan, R.
Iowa State University, Ames, USA
31 May 2005
09:00
09:50
The ISWI ATP-dependent chromatine remodelling factor is a DNA translocase
50'
Bensimon, D.
ENS, Paris, France
09:50
10:40
Molecular engineering of surfaces: from nanomechanics to proteomics
50'
Zhu, X.
University of Minnesota, Minneapolis, USA
10:40
11:00
Coffee Break
20'
11:00
11:50
Single-molecule visualization of protein-DNA interactions
50'
Kowalczykowski, S.
University of California at Davis, USA
11:50
12:40
Pulling a nanostring with a nanomotor: the RuvAB-DNA interaction
50'
Stavans, J.
Weizmann Institute of Science, Rehovot, Israel
12:40
14:30
Break
01h50'
1 June 2005
09:00
09:50
The phage lambda switch: a case study (in biology and TPM methodology)
50'
Finzi, L.
Università degli Studi di Milano, Italy
09:50
10:40
DNA ejection from T5 bacteriophage under osmotic pressure
50'
Livolant, F.
Université Paris-Sud, Orsay, France
10:40
11:00
Coffee break
20'
11:00
11:50
Functional dynamics of PDZ binding domains: a normal mode analysis
50'
De Los Rios, P.
EPFL, Lausanne, Switzerland
11:50
12:40
Solvation effects and the topology-depending folding rates of proteins
50'
Hoang, T.X.
Vietnamese Academy of Science and Technology, Hanoi, Vietnam
12:40
14:30
Break
01h50'
1 June 2005
14:30
15:20
Multi-scale modeling of DNA
50'
Olson, W.
Rutgers, the State University of New Jersey, Piscataway, USA
15:20
16:10
Parametrizations of coarse-grain sequence-dependent models of DNA mechanics
50'
Maddocks, J.H.
EPFL, Lausanne, Switzerland
16:10
16:30
Coffee break
20'
16:30
17:20
Barrier crossing by a long chain molecule
50'
Sebastian, K.L.
Indian Institute of Science, Bangalore, India
17:20
18:10
Modelling biopolymers in a cellular context: physical aspects of DNA replication, transcription and translation
50'
Marenduzzo, D.
University of Warwick, UK
2 June 2005
09:00
09:50
DNA disentangling by topoisomerases
50'
Zechiedrich, E.L.
Baylor College of Medicine, Houston, USA
09:50
10:40
Using supercoiling sensitive genes to study topological domains in Escherichia coli
50'
Postow, L.
Rockefeller University, New York, USA
10:40
11:00
Coffee break
20'
11:00
11:50
Replication origin usage in the frog Xenopus: single-molecule studies on the DNA replication random completion problem
50'
Hyrien, O.
ENS, Paris, France
11:50
12:40
Long-range compaction and organization of interphase chromatin in budding yeast
50'
Bystricky, K.
Université Paul Sabatier, Toulouse, France
12:40
14:30
Break
01h50'
2 June 2005
14:30
15:20
Structure and assembly of viral capsids
50'
Twarock, R.
University of York, UK
15:20
16:10
Poster highlights I
50'


Complete phase diagrame of DNA unzipping  10'
Kapri, R.  (Institute of Physics, Bhubaneswar, India)
Interacting polymers: application to biopolymers  10'
Kumar, S.  (Banaras Hindu University, Varanasi, India)
Force induced unzipping of DNA  10'
Singh, N.  (Baranas Hindu University, Varanasi, India)
On geometry of curved bundles of perfectly packed filaments  10'
Starostin, E.  (Max-Planck-Institute, Dresden, Germany)
16:10
16:30
Coffee break
20'
16:30
17:20
Phase transitions in DNA
50'
Prentiss, M.
Harvard University, Cambridge, USA
17:20
18:10
Poster highlights II
50'


3 June 2005
09:00
09:50
Computer simulation of rare events in biological systems
50'
Laio, A.
USI Campus ETH Zürich, Lugano, Switzerland
09:50
10:40
Ligand binding to biomolecules explored by molecular simulation
50'
Carloni, P.
SISSA, Trieste, Italy
10:40
11:00
Coffee break
20'
11:00
11:50
Heterogenous biochemistry
50'
Sikorav, J.-L.
CEA Saclay, France
11:50
12:10
Final remarks
20'
If you want to make a direct link from your Web page to this agenda, please use this URL:
http://cdsagenda5.ictp.trieste.it/full_display.php?ida=a04192

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